Do you want to try TAPIR, the new tracker by @DeepMind, on microscopy data? We just released it in our #BioImageAnalysis software #CellACDC (no code required) 🥳! At the moment only if you install from source, but it will be released on PyPi soon. Let's see what it is capable of:

New lab member 🤩 Two A6000 #GPUs and a bunch of other #bioimageanalysis delights - looking forward to see where this will take us 😃

You also canNOT wait to try out #Cellpose 3.0, right?

We've got you covered! We just added it to our #BioImageAnalysis software #CellACDC where you can choose which denoising model to run before segmentation and test the denoising in real time! Kurt Schmoller

🧵👇

Are you curious to try the new Segment Anything Model by @MetaAI on microscopy images?
We just added it to our #BioImageAnalysis software #CellACDC . As per all the models, Cell-ACDC will automatically install and download the model and generate the GUI widget for the parameters!

Stumbled upon a gem of a paper, 'Metrics Reloaded,' and it seems like the authors are total nerds for metrics – and I'm loving it! If you're into scientific image analysis using #AI this is a must read.
#microscopy #deeplearning #bioimageanalysis

lnkd.in/gGqWYVNE

Excited for day 2 of the NEUBIAS symposium #bioimageanalysis

I've come across a valuable resource in my routine searches. This dataset seems great for training 3D nuclear instance segmentation models, especially in mouse embryos. Check it out!
#microscopy #bioimageanalysis #deeplearning
biorxiv.org/content/10.110…

Super interesting thoughts from Simon F. Nørrelykke at #biovisioncenter :
👉 #bioimageanalysis core-groups don't fit well into academic research pattern👨‍🎓
👉 Reasonable but somehow also controversial: You contribute to a project intellectually, you are entitled to co- #authorship 🤷‍♂️

I was delighted to present my #BioImageAnalysis work at #ACMM27 earlier this month. Extremely humbled to receive the John Farrant Prize for the best student talk in Biological/Medical Sciences.
Very excited to release this project soon! #Microscopy #ImageJ Yu Suk CHOI UWA Research

🔬👩‍💻🧫 New segmentation and clustering method #Voro3D for fast and easy analysis of large 3D #SMLM datasets with PoCA released by Florian Levet! Now in Frontiers - Bioinformatics and Systems Biology: #bioimageanalysis #ResearchTopic #Bioinformatics doi.org/10.3389/fbinf.…

Can't believe it's been 5 years since I started my #Python tutorial channel! From learning new topics to almost hitting 100K subscribers, it's been an incredible journey. Massive thanks to all my subscribers!
#Microscopy #DeepLearning #Bioimageanalysis

Making the case for permissive licensing in #bioimageanalysis .

Looking for a #practicalcourse on #bioimageanalysis ?😎 #EMBOBioImage registration is already open with an incredible list of speakers+trainers+researchers🤸‍♀️🧠💻🦠👾🔬
embl.org/about/info/cou…

I updated the #LLM -based #BioImageAnalysis -assistant #biabob to use the new gpt-4o model by default (to reduce costs and response time) and I fixed some bugs in Bob's vision capabilities.
Feedback 💚ly welcome!

pip install biabob==0.14.0

github.com/haesleinhuepf/…

🔬 Calling all #bioimageanalysis pros and fans! Seeking unique #cellpose application use cases for my computer vision students. Got any fascinating examples to share?
Let's play 'Will it cellpose?'

Excited to see your unusual submissions! 😁

Please share on!

A bit late, BUT: If you did or did not attend my workshop on #bioimageanalysis with Python and napari🔬 at #Tim2023 - you can find the slides here 👇
f1000research.com/slides/12-365

It is my great pleasure to officially announce the release of our BIOP-desktop and its documentation 🖥️📖🔬 🎉 more on the forum forum.image.sc/t/biop-desktop…
#bioimageanalysis #docker #jupyterlab EPFL EPFL Life Sciences EPFL BIOP

Bye bye bioimage analysts!
See you next time, somewhere in this world
#EMBOBioImage #BioimageAnalysis

Become adept at analyzing your scientific images

Apply for CCAMP #Online Hands-on Basic #BioImageAnalysis Course

Register by 5th April
🔗 bit.ly/BioImageAnalys…
12-14 April

Outcomes: image quantification, feature extraction, automated workflow & high-throughput image analysis

Super impressive new napari🔬 plugin:
Svetlana: a Supervised Segmentation Classifier for Napari
napari-hub.org/plugins/napari…
If you have segmented images, it helps you classify and quantify.
Tutorial video:
youtube.com/watch?v=u_FKuH…
#ML #BioimageAnalysis